Publication Archive

 

Publication year 2012

48. Minde DP, Maurice MM*, Rüdiger SGD (2012), Determining biophysical protein stability in lysates by a fast proteolysis assay, FASTpp, PLoS One, 7, e46147
*co-corresponding

47. Nethe M, de Kreuk BJ, Tauriello DVF, Anthony EC, Snoek B, Stumpel T, Salinas PC, Maurice MM, Geerts D, Deelder AM, Hensbergen PJ, Hordijk PL (2012), Rac1 acts in conjunction with Nedd4 and Dishevelled-1 to promote maturation of cell-cell contacts, J Cell Sci, 125, 3430-42.

46. Tauriello DVF, Jordens I, Kirchner K, Slootstra J, Kruitwagen T, Bouwman, BAM, Rudiger SGD, Schwamborn K, Schambony A, Maurice MM (2012), Dvl employs its DEP domain and C-terminus to bind a discontinuous motif in the Fz receptor and initiate Wnt/?-catenin signaling, Proc Natl Acad Sci USA, 109, E812-20.

45. Bartels M, van Solinge WW, den Breeijen HJ, Bierings MB, Coffer PJ, Egberts TC (2012), Valproic acid treatment is associated with altered leukocyte subsetdevelopment, J Clin Psychopharmacol, 32, 832-4

44. de Jong OG, Verhaar MC, Chen Y, Vader P, Gremmels H, Posthuma G, Schiffelers RM, Gucek M, Bas W.M. van Balkom BMW (2012), Cellular stress conditions are reflected in the protein and RNA content of endothelial cell-derived exosomes, J Extracel Ves, 1:18396.

43. Reggiori F (2012), Autophagy: New questions from recent answers, ISRN Mol Biol, 2012, 738718.

42. Reggiori F, Ungermann C (2012), Tethering activities among early autophagosomal proteins, Cell, 151, 1403-1405.

41. Cebollero E, van der Vaart A, Reggiori F (2012), Understanding phosphatidylinositol-3-phosphate dynamics during autophagosome biogenesis, Autophagy, 8, 1868–1870.

40. Hassink, GC, Slotman J, Oorschot V, van der Reijden BA, Monteferrario D, Noordermeer SM, van Kerkhof P, Klumperman J, Strous GJ (2012), Identification of the ubiquitin ligase Triad1 as regulator of endosomal transport, Biology Open, 1, 607-614.

39. Nespital T, Strous GJ (2012), The Jak/Stat signaling pathway is downregulated at febrile temperatures, PLoS ONE, 7, e49374.

38.  van de Laar L, van den Bosch A, Boonstra A, Binda RS, Buitenhuis M, Janssen HL, Coffer PJ, Woltman AM (2012), PI3K-PKB hyperactivation augments human plasmacytoid dendritic cell development and function, Blood, 120, 4982-91.

37.  van der Vos KE, Coffer PJ (2012), Glutamine metabolism links growth factor signaling to the regulation of autophagy, Autophagy, 8, 1862-4.

36. Beekman JM, Vervoort SJ, Dekkers F, van Vessem ME, Vendelbosch S, Brugulat-Panès A, van Loosdregt J, Braat AK, Coffer PJ (2012), Syntenin-mediated regulation of Sox4 proteasomal degradation modulates transcriptional output, Oncogene, 31, 2668-79.

35. Ivan V, Martinez-Sanchez E, Sima LE, Oorschot V, Klumperman J, Petrescu SM, van der Sluijs P (2012), AP-3 and Rabip4' coordinately regulate spatial distribution of lysosomes, PLoS One, 7, e48142.

34. Weil TT, Parton RM, Herpers B, Soetaert J, Veenendaal T, Xanthakis D, Dobbie IM, Halstead J, Hayashi R, Rabouille C, Davis I (2012), Drosophila patterning is established by differential association of mRNAs with P bodies, Nat. Cell Biol, in press.

33. Rabouille C, Malhotra V, Nickel W (2012), Diversity in unconventional protein secretion, J Cell Sci, in press.

32. van Es JH, Sato T, van de Wetering M, Lyubimova A, Yee Nee AN, Gregorieff A, Sasaki N, Zeinstra L, van den Born M, Korving J, Martens AC, Barker N, van Oudenaarden A, Clevers H (2012), Dll1(+) secretory progenitor cells revert to stem cells upon crypt damage, Nat Cell Biol,  14, 1099-1105.

31. Meng R, Wang Y, Yao Y, Zhang Z, Harper DC, Heijnen HF, Sitaram A, Li W, Raposo G, Weiss MJ, Poncz M, Marks MS (2012), SLC35D3 delivery from megakaryocyte early endosomes is required for platelet dense granule biogenesis and is differentially defective in Hermansky-Pudlak syndrome models, Blood, 120, 404-14.

30. Smith H, Galmes R, Gogolina E, Straatman-Iwanowska A, Reay K, Banushi B, Bruce CK, Cullinane AR, Romero R, Chang R, Ackermann O, Baumann C, Cangul H, Cakmak Celik F, Aygun C, Coward R, Dionisi-Vici C, Sibbles B, Inward C, Ae Kim C, Klumperman J, Knisely AS, Watson SP, Gissen P (2012), Associations among genotype, clinical phenotype, and intracellular localization of trafficking proteins in ARC syndrome, Hum Mutat, 33, 1656-64.

29. Thayanidhi N, Liang Y, Hasegawa H, Nycz DC, Oorschot V, Klumperman J, Hay JC (2012), R-SNARE ykt6 resides in membrane-associated protease-resistant protein particles and modulates cell cycle progression when over-expressed, Biol Cell, 104, 397-417.

28. Cebollero E, van der Vaart A, Zhao M, Rieter E, Klionsky DJ, Helms JB, Reggiori F (2012), Phosphatidylinositol-3-phosphate clearance plays a key role in autophagosome completion, Curr Biol, 22, 1545-1553.

27. Slotman JA, van Kerkhof P, Hassink G, Kuiken HJ, Strous GJ (2012). Identification of ubiquitin system factors in growth hormone receptor transport, in Molecular regulation of endocytosis, Brian Ceresa (Ed.).

26. Koo BK, Spit M, Jordens I, Low TY, Stange DE, van de Wetering M, van Es JH, Mohammed S, Heck AJ, Maurice MM, Clevers H (2012), Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors, Nature, 488, 665-9.

25. Li VS, Ng SS, Boersema PJ, Low TY, Karthaus WR, Gerlach JP, Mohammed S, Heck AJ, Maurice MM, Mahmoudi T, Clevers H (2012), Wnt signaling through inhibition of β-catenin degradation in an intact Axin1 complex, Cell, 149, 1245-56.

24.WCJ van de Donk NWCJ, Görgün G, Groen RWJ, Jakubikova J, Mitsiades CS, Hideshima T, Laubach J, Inger S Nijhof IS, Raymakers RA, Lokhorst HM, Paul G, Richardson PG, Anderson KC (2012), Lenalidomide forthe treatmentofrelapsed andrefractorymultiplemyeloma, Cancer Man Res, 4, 253–268.

23. van der Vos KE, Eliasson P, Proikas-Cezanne T, Vervoort SJ, van Boxtel R, Putker M, van Zutphen IJ, Mauthe M, Zellmer S, Pals C, Verhagen LP, Groot Koerkamp MJ, Braat AK, Dansen TB, Holstege FC, Gebhardt R, Burgering BM,Coffer PJ (2012), Modulation of glutamine metabolism by the PI(3)K-PKB-FOXO network regulates autophagy, Nat Cell Biol, 14, 829-37.

22. Visser G, de Jager W, Verhagen LP, Smit GP, Wijburg FA, Prakken BJ, Coffer PJ , Buitenhuis M (2012), Survival, but not maturation, is affected in neutrophil progenitors from GSD-1b patients, J Inherit Metab Dis, 35, 287-300.

21. Groen RWJ, Noort WA, Raymakers RA, Prins HJ, Aalders L, Hofhuis FM, Moerer P, van Velzen JF, Bloem AC, van Kessel B, Rozemuller H, van Binsbergen E, Buijs A, Yuan H, de Bruijn JD, de Weers M, Parren PWHI, Schuringa JJ, Lokhorst HM, Mutis T, Martens AC (2012), Reconstructing the human hematopoietic niche in immunodeficient mice: opportunities for studying primary multiple myeloma, Blood, 120, e9-e16.

20. Reggiori F, Tooze S (2012), Autophagy regulation through Atg9 traffic, J Cell Biol, 198, 151-153.

19. Hogenes MC, van Dorp S, van Kuik J, Monteiro FR, Ter Hoeve N, van Dijk MR, Martens AC, de Weger RA (2012), Histological assessment of the sclerotic graft-versus-host response in the humanized RAG2(-/-)γc(-/-) mouse model,Biol Blood Marrow Transplant, 18, 1023-35.

18. Bernasconi R, Galli C, Noack J, Bianchi S, de Haan CA, Reggiori F, Molinari M (2012), Role of the SEL1L:LC3-I complex as an ERAD tuning receptor in the mammalian ER, Mol Cell, 46, 809-19.

17. van der Zand A, Reggiori F (2012), Up for grabs; trashing peroxisomes, EMBO J, 31, 2835-6.

16. Nair U, Yen WL, Mari M, Cao Y, Xie Z, Baba M, Reggiori F, Klionsky DJ (2012), A role for Atg8–PE deconjugation in autophagosome biogenesis, Autophagy, 8, 780 – 793.

15. Erpapazoglou Z, Dhaoui M, Pantazopoulou M, Giordano F, Mari M, Léon S, Raposo G, Reggiori F, Haguenauer-Tsapis R (2012), A dual role for K63-linked ubiquitin chains in multivesicular bodies biogenesis and cargo sorting, Mol Biol Cell, 23, 2170-2183.

14. Klionsky et al. (2012), Guidelines for the use and interpretation of assays for monitoring autophagy, Autophagy, 8, 445-544.

13. Slotman JA, da Silva Almeida AC, Hassink GC, van de Ven RH, van Kerkhof P, Kuiken HJ, Strous GJ (2012), Ubc13 and COOH terminus of Hsp70-interacting protein (CHIP) are required for growth hormone receptor endocytosis, J Biol Chem, 287, 15533-43.

12. Elstak ED, Neeft M, Nehme NT, Callebaut I, de Saint Basile G, van der Sluijs P (2012), Munc13-4*rab27 complex tethers secretory lysosomes at the plasma membrane, Comm Integr Biol, 5, 64-67.

11.  de Jong PR, Schadenberg AW, van den Broek T, Beekman JM, van Wijk F, Coffer PJ, Prakken BJ, Jansen NJ (2012) STAT3 regulates monocyte TNF-alpha production in systemic inflammation caused by cardiac Surgery with cardiopulmonary bypass, PLoS One, 7, e35070.

10. van de Laar L, Coffer PJ, Woltman AM (2012), Regulation of dendritic cell development by GM-CSF: molecular control and implications for immune homeostasis and therapy, Blood, 119, 3383-93.

9. da Silva Almeida AC, Strous GJ, van Rossum AG (2012), βTrCP controls GH receptor degradation via two different motifs., Mol Endocrinol, 26, 165-77.

8. Sancenon V, Lee S-A, Patrick C, Griffith J, Paulino A, Outeiro TF, Reggiori F, Masliah E, Muchowski PJ (2012), Suppression of a-synuclein toxicity and vesicle trafficking defects by phosphorylation at S129 in yeast depends on genetic context, Hum Mol Gen, 21, 2432-49.

7. Verrijn Stuart AA, Schipper HS, Tasdelen I, Egan DA, Prakken BJ, Kalkhoven E, de Jager W (2012), Altered plasma adipokine levels and in vitro adipocyte differentiation in pediatric type 1 diabetes, J Clin Endocrinol Metab, 97, 463-72.

6. de Raad M, Teunissen EA, Lelieveld D, Egan DA, Mastrobattista E (2012), High-content screening of peptide-based non-viral gene delivery systems, J Control Release, 158, 433-42.

5. Reggiori F*, Komatsu M, Finley K, Simonsen A (2012), Selective types of autophagy, Int J Cell Biol, 2012, 219625.
*co-corresponding author

4. Cebollero E, Reggiori F*, Kraft C (2012), Reticulophagy and ribophagy: Regulated degradation of the protein production factories, Int J Cell Biol, 2012: 182834.
*co-corresponding author

3. Nair U, Mari M, Baba M., Yen W.-L., Xie Z, Cao Y, Reggiori F, Klionsky DJ (2012), Atg8-PE deconjugation plays a role in autophagosome biogenesis, Autophagy, 8, 780-793.

2. Vercoulen Y, Guichelaar T, Meerding J, Emmelot M, Pingen M, Storm G, Coffer P, Martens AC, Mutis T, Prakken B (2012), Application of cultured human regulatory T cells requires preclinical in vivo evaluation, J Allergy Clin immunol, 129, 852-855.

1. van der Vos EK, Gomez-Puerto C, Coffer PJ (2012), Regulation of autophagy by Forkhead box (FOX) O transcription factors, Adv Enzyme Regul, 52, 122-136.

 

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