Publication Archive

 

Publication year 2013

38. Marks MS, Heijnen HF, Raposo G (2013), Lysosome-related organelles: unusual compartments become mainstream, Curr Opin Cell Biol, 25, 495-505.

37. Kondylis V, van Nispen Tot Pannerden HE, van Dijk S, Ten Broeke T, Wubbolts R, Geerts WJ, Seinen C, Mutis T, Heijnen HF (2013), Endosome-mediated autophagy: an unconventional MIIC-driven autophagic pathway operational in dendritic cells, Autophagy, 9, 861-80.

36. Carrancio S, Romo C, Ramos T, Lopez-Holgado N, Muntion S, Prins HJ, Martens AC, Briñón JG, San Miguel JF, Del Cañizo MC, Sanchez-Guijo F (2013), Effects of MSC coadministration and route of delivery on cord blood hematopoietic stem cell engraftment, Cell Transplant, 22, 1171-83.

35. van der Sluijs P, Zibouche M, van Kerkhof P (2013), Late steps in secretory lysosome exocytosis in cytotoxic lymphocytes, Front Immunol, 4, 359.

34. Minde DP, Radli M, Forneris F, Maurice MM*, Rüdiger SG* (2013), Large extent of disorder in Adenomatous Polyposis Coli offers a strategy to guard Wnt signaling against point mutations, PLoS One, 8, e7725.
*co-corresponding author

33. Boisset JC, Clapes T, Van Der Linden R, Dzierzak E, Robin C (2013), Integrin ?IIb (CD41) plays a role in the maintenance of hematopoietic stem cell activity in the mouse embryonic aorta, Biol Open, 2, 525-32.

32. Arpaia N, Campbell C, Fan X, Dikiy S, van der Veeken J, deRoos P, Liu H, Cross JR, Pfeffer K, Coffer PJ, Rudensky AY (2013), Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation, Nature, 504, 451-5.

31. Gao Y, Koppen A, Rakhshandehroo M, Tasdelen I, van de Graaf SF, van Loosdregt  J, van Beekum O, Hamers N, van Leenen D, Berkers CR, Berger R, Holstege FC, Coffer PJ, Brenkman AB, Ovaa H, Kalkhoven E (2013), Early adipogenesis is regulated through USP7-mediated deubiquitination of the histone acetyltransferase TIP60, Nat Commun, 2013, 4, 2656.

30. Sanchez-Wandelmer J, Reggiori F (2013), Amphisomes: out of the autophagosome shadow? EMBO J, 32, 3116-8.

29. de Haart SJ, van de Donk NW, Minnema MC, Huang JH, Aarts-Riemens T, Bovenschen N, Yuan H, Groen RW, McMillin DW, Jakubikova J, Lokhorst HM, Martens AC, Mitsiades CS, Mutis T (2013), Accessory Cells of the Microenvironment Protect Multiple Myeloma from T-Cell Cytotoxicity through Cell Adhesion-Mediated Immune Resistance, Clin Cancer Res, 19, 5591-601.

28. Giuliani F, Giuliani G, Bauer R, Rabouille C (2013), Innexin 3, a new gene required for dorsal closure in Drosophila embryo. PLoS One, 8:e69212.

27. de Haart SJ, van de Donk NW, Minnema MC, Huang JH, Aarts-Riemens T, Bovenschen N, Yuan H, Groen RW, McMillin DW, Jakubikova J, Lokhorst HM, Martens AC, Mitsiades CS, Mutis T (2013), Accessory cells of the microenvironment protect multiple myeloma from T cell cytotoxicity through cell adhesion-mediated immune resistance, Clin Cancer Res, 19, 5591-601.

26. Torensma R, Prins HJ, Schrama E, Verwiel ET, Martens AC, Roelofs H, Jansen BJ (2013), The impact of cell source, culture methodology, culture location, and individual donors on gene expression profiles of bone marrow-derived and adipose-derived stromal cells, Stem Cells Dev, 22, 1086-96.

25. Guichelaar, T., Emmelot, M. E., Rozemuller, H., Martini, B., Groen, R. W. J., Storm, G., Lokhorst H, Martens AC,  Mutis T (2013), Human regulatory T cells do not suppress the antitumor immunity in the bone marrow: a role for bone marrow stromal cells in neutralizing regulatory T cells, Clin Cancer Res, 19, 1467–1475.

24. Jung H, Kim BG, Han WH, Lee JH, Cho JY, Park WS, Maurice MM, Han JK, Lee MJ, Finley D, Jho EH (2013), Deubiquitination of dishevelled by Usp14 is required for Wnt signaling, Oncogenesis, 2, e64.

23. Xue B, Romero PR, Noutsou M, Maurice MM, Rüdiger SG, William AM Jr, Mizianty MJ, Kurgan L, Uversky VN, Dunker AK. (2013), Stochastic machines as a colocalization mechanism for scaffold protein function, FEBS Lett, 587, 1587-91.

22. Bestebroer J, V'kovski P, Mauthe M, Reggiori F (2013), Hidden behind autophagy: The unconventional roles of ATG proteins, Traffic, 14, 1029–1041.

21. Johnson L, Huseni M, Smyczek T, Lima A, Yeung S, Cheng JH, Molina R, Kan D, De Mazière A, Klumperman J, Kasman I, Zhang Y, Dennis MS, Eastham-Anderson J, Jubb AM, Hwang O, Desai R, Schmidt M, Nannini MA, Barck KH, Carano RA, Forrest WF, Song Q, Chen DS, Naumovski L, Singh M, Ye W, Hegde PS (2013), Anti-EGFL7 antibodies enhance stress-induced endothelial cell death and anti-VEGF efficacy, J Clin Invest, 123, 3997-4009.

20. Ellegaard AM, Groth-Pedersen L, Oorschot V, Klumperman J, Kirkegaard T, Nylandsted J, Jaattela M (2013), Sunitinib and SU11652 inhibit acid sphingomyelinase, destabilize lysosomes and inhibit multidrug resistance, Mol Cancer Ther, 12, 2018-2030.

19. Wilson CW, Parker LH, Hall CJ, Smyczek T, Mak J, Crow A, Posthuma G, De Mazière A, Sagolla M, Chalouni C, Vitorino P, Roose-Girma M, Warming S, Klumperman J, Crosier PS, Ye W (2013), Rasip1 regulates vertebrate vascular endothelial junction stability through Epac1-Rap1 signaling, Blood, 122, 3678-3690.

18.  van Loosdregt J, Fleskens V, Fu J, Brenkman AB, Bekker CP, Pals CE, Meerding J, Berkers CR, Barbi J, Gröne A, Sijts AJ, Maurice MM, Kalkhoven E, Prakken BJ, Ovaa H, Pan F, Zaiss DM, Coffer PJ (2013), Stabilization of the transcription factor Foxp3 by the deubiquitinase USP7 increases Treg-cell-suppressive capacity, Immunity, 39, 259-71.

17.  van Loosdregt J, Fleskens V, Tiemessen MM, Mokry M, van Boxtel R, Meerding J, Pals CE, Kurek D, Baert MR, Delemarre EM, Gröne A, Koerkamp MJ, Sijts AJ, Nieuwenhuis EE, Maurice MM, van Es JH, Ten Berge D, Holstege FC, Staal FJ, Zaiss DM, Prakken BJ, Coffer PJ (2013), Canonical wnt signaling negatively modulates regulatory T cell function, Immunity, 39, 298-310.

16.  van Boxtel R, Gomez-Puerto C, Mokry M, Eijkelenboom A, van der Vos KE, Nieuwenhuis EE, Burgering BM, Lam EW, Coffer PJ (2013), FOXP1 acts through a negative feedback loop to suppress FOXO-induced apoptosis, Cell Death Differ, 20, 1219-29.

15.  Gebhardt R, Coffer PJ (2013), Hepatic autophagy is differentially regulated in periportal and pericentral zones - a general mechanism relevant for other tissues? Cell Commun Signal, 11, 21.

14. Boya P*, Reggiori F*, Codogno P* (2013), Emerging regulation and functions of autophagy, Nat Cell Biol, 15, 713-720.
*co-corresponding author

13. Karanasios E, Barbosa AD, Sembongi H, Mari M, Han G-S, Reggiori F, Carman GM, Siniossoglou S (2013), Regulation of lipid and membrane biogenesis by the acidic tail of the phosphatidate phosphatase Pah1p, Mol Biol Cell, 24, 2124-33.

12. Reggiori F, Klionsky DJ (2013), Autophagic processes in yeast: Mechanisms, machineries and regulation, Genetics, 194, 341-61.

11. Rieter E, Vinke F, Bakula D, Cebollero E, Ungermann C, Proikas-Cezanne T, Reggiori F (2013), Atg18 function in autophagy is regulated by specific sites within its ?-propeller, J Cell Sci, 126, 593-604.

10. Lowery J, Szul T, Styers M, Holloway Z, Oorschot V, Klumperman J, Sztul E (2013), The Sec7 guanine nucleotide exchange factor GBF1 regulates membrane recruitment of BIG1 and BIG2 to the trans-Golgi network (TGN), J Biol Chem, 288, 11532-45.

9. Cabrera M, Epp N, Arlt H, Lachmann J, Nordmann M, Griffith J, Ahnert F, Perz A, Reggiori F, Ungermann C (2013), Functional separation of endosomal fusion factors and the CORVET tethering complex in endosome biogenesis, J Biol Chem, 288, 5166–5175.

8. Steevels TA, Van Avondt K, Westerlaken GH, Stalpers F, Walk J, Bont L, Coffer PJ, Meyaard L (2013), Signal inhibitory receptor on leukocytes-1 (SIRL-1) negatively regulates the oxidative burst in human phagocytes, Eur J Immunol, 43, 1297-1308.

7. Zaiss DM, van Loosdregt J, Gorlani A, Bekker CP, Gröne A, Sibilia M, van Bergen En Henegouwen PM, Roovers RC, Coffer PJ, Sijts AJ (2013), Amphiregulin enhances regulatory T cell-suppressive function via the epidermal growth factor receptor, Immunity, 38, 275-84.

6. Tasdelen I, van Beekum O, Gorbenko O, Fleskens V, van den Broek NJ, Koppen A, Hamers N, Berger R, Coffer PJ, Brenkman AB, Kalkhoven E (2013), The serine/threonine phosphatase PPM1B (PP2C?) selectively modulates PPAR? Activity, Biochem J, 451, 45-53.

5. Vervoort SJ, Lourenço AR, van Boxtel R, Coffer PJ (2013), SOX4 mediates TGF-?-induced expression of mesenchymal markers during mammary cell epithelial to mesenchymal transition, PLoS One, 8, e53238.

4. Vervoort SJ, van Boxtel R, Coffer PJ (2012), The role of SRY-related HMG box transcription factor 4 (SOX4) in tumorigenesis and metastasis: friend or foe? Oncogene, 32, 3397-409.

3. Pols MS, van Meel E, Oorschot V, Ten Brink C, Fukuda M, Swetha MG, Mayor S, Klumperman J (2013), hVps41 and VAMP7 function in direct TGN to late endosome transport of lysosomal membrane proteins, Nat Commun. 4:1361.

2. Monastyrska I, Ulasli M, Rottier PJM, Reggiori F*, de Haan CAM (2013), An autophagy-independent role for LC3 in equine arteritis virus replication, Autophagy, 9, 164-74.
*co-corresponding author

1. Pols MS, Ten Brink C, Gosavi P, Oorschot V, Klumperman J (2013), The HOPS Proteins hVps41 and hVps39 are required for homotypic and heterotypic late endosome fusion, Traffic, 14, 219-32.

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